Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttactttgatatgatggcccctctcctagattcttaggacgcaaattatttgcagtgagcaaggcccatccatatctacattctcacttcttgatcctcaacttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA

Basic information

species Arabidopsis thaliana
transcript AT1G24764.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os12g44340.1 (Oryza sativa), 3'ss of exon 7
------------------------------------------------------------gtttactttgatatgatggcccctctcctagattcttaggacgcaaattatttgcagtg-agcaaggcccatccatatctacattctc----acttcttgatcctcaacttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA
                                                                  ||| ||   |       | ||     | |  |   |  |||     |  | |   |     |   |     ||||  || |     | ||  |  || |    | ||||||||||||||||||||||||| || ||||| || || ||| ||||  |||| |||  ||| || || || || |||
gtaagtaatgctatcatttaattatgtgctattgctgacttgttctggatggatacagtgaagccttttaatgcaacaattgttttcacttttccccactcc-taaacggagtatactatggttcatctttttggggtctaatttgttgggaattttcttttctttctttcttttgcagGGAGAAATGCAGCAACTCCGGGATAAACTGGCTATAGCAGAAAGGGCCGCACGATCAGAAGCTCAATTGAAA

upper sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 3
gtttactttgatatgatggcccctctcctagattcttaggacgc----aaattatttgcagtgagca-----aggcccatccatatctacattc--tcacttcttgatcctcaactttttt-gcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA
       |   |   ||    | | || |  | | ||| |  ||     | ||  | |  ||          | |  | ||       |  ||   | | || ||||   |   ||||||| ||||||||||||||||||||| || || || || || ||  ||||  ||||||||| ||| || || ||  | |||
------gtaagtgaaatatatcttttcttctagttttaagctgctaccgagttgctcgtggtagatttgtacaagttcttcagcggtgaattttattgatttgttgaatattgtctttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAAGATCAGAAGCTCAACTGAAA

upper sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G09390.1 (Glycine max), 3'ss of exon 7
---------------------------gtttactttgatatgatggcccctctcctagatt--------cttaggacgcaaattatttgcagtgagcaagg-cccatccatatctaca-ttctcacttcttgatcctcaacttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA
                            || |  |  || |  |||      |  |  |||        |||    |  | |||  ||      || ||   |||     |  || |  ||  ||||| ||  |        || ||  ||||||||||||||||||||||||| ||||| || |||   || || ||||||||||  || |||||||| |||
gtaatatttttttgttttactctgccaattcatctgaatttagtggttgagtttttgaattccattactctttctgcttatatttcttttttatagtaatttcccgcatctggcttcgctttccacttattattaaattgaattcttatagGGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAATATGAAGCACAGTTGAAA

upper sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G26540.1 (Glycine max), 3'ss of exon 7
---------------------------gtttactttgatatgatggcccctctcctagattcttaggacgcaaattatttgcagtgagcaaggcccatccatatct-acattc----tcacttcttgatcctca-------acttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA
                            || |  |  || |  |||      || | || |   | ||| |   ||  ||  | |           ||  || ||  |||||     || |||   | |  | |        | || ||  ||||||||||||||||||||||||| ||||| || |||   || || |||||||| || || ||||| || |||
gtaatatttttttgctttactctgccaattcatctgaatttagtggttgagttctt-gacttccatgactctttttgcttatatttcttcttttatattaatttcccacatttggcttcgctttccgcttattattaaattgcattcttatagGGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAA

upper sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA08G05100.1 (Glycine max), 3'ss of exon 7
---------------gtttactttgatatgatggcccctctcctagattcttaggacgcaaattatttgcagt---gagcaaggcccatccatatctacattctcacttcttgatc---ctcaacttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA
               | || |||||   | |          |||   || |||  |   ||| ||| |    |   |     ||     |   |      ||  || || || | |   ||  |||||| |  ||||||| |||||||||||||| || ||||| || ||||| || ||  ||||||| || || ||||||||||||
gtggatatcatttctgattcctttggatttaatcttttgtgcctttttttttataaaaaaaagtatatatcttcttgcatttggtttcccttcaatacggtttccatttttttaccaaactacacttttat-tagGGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAGTTAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164000241|gb|ES019332.1|ES019332
EST:     ATGGCCCGAAGAACGAAGGTTTCTACAG                         GGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCA
genomic: ATGGCTCGAAGAACGAAGGTTTCTACAGgtttactttg ... ttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaaggcccatccatatctacattctcacttcttgatcctcaacttttttgcagGGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA
                                     tcctcaactttttt  CT-rich tract
                                          aactttttt  TA-rich tract