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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttagactagtataaccaatttgatttgagttctattataagcttttcttaagaaagtatctcaaactactaaattttatggagcagGTATCAGGGGCAACAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTACATGTTGGGTTGGTTACCTTATGACACCAACTCTATTTGAATCTTTCTC

Basic information

species Arabidopsis thaliana
transcript AT1G24260.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163974693|gb|ES186173.1|ES186173
EST:     TCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGG                         GTATCAGGGGCAGCAAGATGGAATGGGAGCAGG
genomic: TCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGgtaactttag ... tatggagcagGTATCAGGGGCAACAAGATGGAATGGGAGCAGG
EST: gi|164154657|gb|ES062136.1|ES062136
EST:     GCCTTTGGAATGTGAACCCATTCTTCAGATCGG                         GTATCAGGGGCAGCAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTA
genomic: GCCTTTGGAATGTGAACCCATTCTTCAGATCGGgtaactttag ... tatggagcagGTATCAGGGGCAACAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattataagcttttcttaagaaagtatctcaaactactaaattttatggagcagGTATCAGGGGCAACAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTACATGTTGGGTTGGTTACCTTATGACACCAACTCTATTTGAATCTTTCTC
                                   tactaaa  putative branch site (score: 1)
                               aaactactaaatttta  TA-rich tract