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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcactttctggattcttttgcgtattctgttacttaacagaaaacaaatcagttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgtcaagcagGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G22870.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 7
gtagtcactttctggattcttttgcgtattctgttacttaacagaaaacaaatcagttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgtcaagcagGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAG
       || | ||   | ||     | || |||  |     | || |  |  |   || | |  ||||        ||      |    |  ||   |||| ||| ||||| ||||||||||||||||||||  |  | ||  |||||||||| ||| ||||| | || ||||||||||| |||||||| ||||||
-------ctgtttgtgcttttcaaactgttttgt--ccaggaaaaagaacagccttatatttatttgatccattggttatttcaaagctgactcacactttg-caaccagGTTCTTCCTCCTCTTTGTGCTGAGTTACGCAACATGGTTATGCAGCCAATGATTTTGCCTATGGTTCTAACAATAGCAGAATCTCAG

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 7
gtagtcactttctggattcttttgcgtattctgttacttaacagaaaacaaatcagttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgtcaagcagGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAG
    ||| | |    | |  ||| |      |  |  | ||     |  |  |   || | | | ||   ||   | |   |  |   ||||  |  ||    || |||||| ||||| || |||||||| || ||||||||| |||| || || ||| ||||||| || ||||||||||| || || |||||||||
---ttcaatgttattacttctttactctgatttctcttgaattttgagtatgtttttttcactattgtcatg---aatgtaatttggacaaataaaatt----catgcagGTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTCTACCAATGGTTCTAACCATTGCCGAGTCTCAG

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 7
gtagtcactttctggattcttttgcgtattctgttacttaacagaaaacaaatcagttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgtcaagcagGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAG
        |   ||   |   ||    | ||||     |     |     | | |  |  |    | | |    | || |     | |   || |   |   |||  ||||| ||||| || |||||||| || ||||||||| |||| || || ||| ||||| | || ||||||||||| || ||||||||||||
--------taaatgttattacttcttgactctgaattctcctgaattttgagtta--tgtttttttcactattgtcgtgaatgtaatttggacaaatataattcatacagGTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAG

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 7
gtagtcactttctggattcttttgcgtattctgttacttaacagaaaacaaatcagttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgt----caagcagGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAG
              |  | ||| |  || |   | | | ||  |    ||| |       |     |   ||  |||   |||  ||   |      |||| |    || | |||||||||| ||||||||||| |||||| | |||||||| ||||||||| ||||||||||||||||||| || ||||| |||||||||
--------------gtctgtttagtttaatgaatcattcaaatgccttcaattattgcttttggaaggcatgaatagcttcaatgaagagattttccttttatgtttcatgtagGTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactcaagtgatttgcctagtaacaactaatcaaaccaggttttgtcaagcagGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAG
                                          ttttgtc  CT-rich tract
                             taatcaaa  TA-rich tract