Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatagtaacatgattaggtttaatggctttgttgtttgatctgatttttaatactctctgttctaaatgctgtgacagGGTTTGAAGGAAGAACTTATAGTTGACTTGGTCGAGCAATGTCGTACTTATCAAAGACGTGTAATGGCTCTTGTGAATACTACTTC

Basic information

species Arabidopsis thaliana
transcript AT1G21380.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125049843|gb|EL122112.1|EL122112
EST:     TTGATGTTTTGACAGACATGCTTGGGGCTCTTGATCCAAGTCATCCAGAG                         GGTTTGAAGGAAGAACTTATAGTTGACTTGGTCGAGCA
genomic: TTGATGTTTTGACAGACATGCTTGGGGCTCTTGATCCAAGTCATCCAGAGgtagaatagt ... gctgtgacagGGTTTGAAGGAAGAACTTATAGTTGACTTGGTCGAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggctttgttgtttgatctgatttttaatactctctgttctaaatgctgtgacagGGTTTGAAGGAAGAACTTATAGTTGACTTGGTCGAGCAATGTCGTACTTATCAAAGACGTGTAATGGCTCTTGTGAATACTACTTC
                                     ttctaaa  putative branch site (score: 2)
               atctgatttttaata  TA-rich tract