1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttattttacacctctgcaatctaaatatctgtagtatgaatcagtaaagctttgtattaactctgttatacatgtgatgtagGAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGGCTGCAAGGAATCTCTCGGATGTTTTTATCTCCTCTCTTAAAATGTTAAT
species | Arabidopsis thaliana |
transcript | AT1G20696.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATGGCAGTGAAGAG GAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGGEST: gi|301502423|gb|HO207963.1|HO207963
genomic: GGATGGCAGTGAAGAGgtaagttatt ... tgtgatgtagGAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGG
EST: CAGTTTCAGAGGTTAACGATGAGGATGATGCTGAGGATGGCAGTGAAGAG GAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGT
genomic: CAGTTTCAGAGGTTAACGATGAGGATGATGCTGAGGATGGCAGTGAAGAGgtaagttatt ... tgtgatgtagGAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGT
tctgtagtatgaatcagtaaagctttgtattaactctgttatacatgtgatgtagGAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGGCTGCAAGGAATCTCTCGGATGTTTTTATCTCCTCTCTTAAAATGTTAAT
tattaac putative branch site (score: 1)
tttgtattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttattttacacctctgcaatctaaatatctgtagtatgaatcagtaaagctttgtattaactctgttatacatgtgatgtagGAGGAAGACGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGGCTGCAAGGAATCTCTCGGATGTTTTTATCTCCTCTCTTAAAATGTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC