1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtggtctgagtttttaatgttaacgtcatagcatatataaagagctttgattttaactcttgttactttggtgtgtaattaaattgcaggagGAGGACGATGACTAAGAAGCTGAATGTTGGTAGCATTAGTATAGATGGCTGCAAAAATCTCTCTGTTTTTATCTTTACTTGAAATGTTAACGGGGCTGAT
species | Arabidopsis thaliana |
transcript | AT1G20693.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATGACGAGGATGATGCTGAGGATGGTAGTGAAGAGGAGEST: gi|19799425|gb|AU230715.1|AU230715
genomic: CAATGACGAGGATGATGCTGAGGATGGTAGTG-A-A-GAGgttagtggtc ... attgcagg
EST: CAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGAAGAGGAG
genomic: CAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTG-A-A-GAGgttagtggtc ... attgcagg
taaagagctttgattttaactcttgttactttggtgtgtaattaaattgcaggagGAGGACGATGACTAAGAAGCTGAATGTTGGTAGCATTAGTATAGATGGCTGCAAAAATCTCTCTGTTTTTATCTTTACTTGAAATGTTAACGGGGCTGAT
ttttaac putative branch site (score: 2)
tgtgtaattaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtggtctgagtttttaatgttaacgtcatagcatatataaagagctttgattttaactcttgttactttggtgtgtaattaaattgcaggagGAGGACGATGACTAAGAAGCTGAATGTTGGTAGCATTAGTATAGATGGCTGCAAAAATCTCTCTGTTTTTATCTTTACTTGAAATGTTAACGGGGCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT