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gtagcagtctcttagtggtcatctggacttttttacactattcctatagataacattgacttcaatagatttttgtatatatttcagGAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCTGCTGGCAGAGAAGATATTGAT
species | Arabidopsis thaliana |
transcript | AT1G20410.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATTATTTGATGATGAAAGAATGGGGGAAGCGTCTGTTGAG GAGATACTTGGTGGAAACATTCTTCCAGCAEST: gi|124794753|gb|EH884432.1|EH884432
genomic: GGATTA-TTGATGATGAAAGAATGGGGGAAGCGTCTGTTGAGgtagcagtct ... tatatttcagGAGATACTTGGTGGAAACATTCTTCCAGCA
EST: AATCACGATGGATTATTGATGATGAAAGAATGGGGGAAGCGTCTGTTGAG GAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGG
genomic: AATCACGATGGATTATTGATGATGAAAGAATGGGGGAAGCGTCTGTTGAGgtagcagtct ... tatatttcagGAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGG
ttacactattcctatagataacattgacttcaatagatttttgtatatatttcagGAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCTGCTGGCAGAGAAGATATTGAT
cattgac putative branch site (score: 3)
ttcaatagatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcagtctcttagtggtcatctggacttttttacactattcctatagataacattgacttcaatagatttttgtatatatttcagGAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCTGCTGGCAGAGAAGATATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT