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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgactgtctaactctcagtccttgtgtatagattggcttttactttaaacactgatcgattgctgcaaatcttatttccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG

Basic information

species Arabidopsis thaliana
transcript AT1G17370.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486725|gb|EG529317.1|EG529317
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|116386087|gb|EG428679.1|EG428679
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|116486731|gb|EG529323.1|EG529323
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|125032627|gb|EL104896.1|EL104896
EST:     TGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: TGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|125255788|gb|EL269873.1|EL269873
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTGGGAAA
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTGGGAAA
EST: gi|125278859|gb|EL292944.1|EL292944
EST:     GAGGATTTGGATTTGTTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: GAGGATTTGGATTTG-TTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|116486728|gb|EG529320.1|EG529320
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|116386137|gb|EG428729.1|EG428729
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
EST: gi|116477129|gb|EG519721.1|EG519721
EST:     AAACTGGGCGTTCAAGAGGATTTGGATTTGCTTCCTTCCGTAACCAACAG                         GATGCCCAGACTGCAATAGATGAGATAACTG
genomic: AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgtacttgact ... ccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcttttactttaaacactgatcgattgctgcaaatcttatttccttatgcagGATGCCCAGACTGCAATAGATGAGATAACTG
                 cactgat  putative branch site (score: 3)
                                     tcttatttccttat  putative PPT
     ttttactttaaaca  TA-rich tract