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gtctatcccaaatttgggttttcctcaagtcacattgcgcagatgatatataatcgctaaaaacttacctactttggtcttgctctgtttctgtgtttagGTACGAGCTTTATTTGATCACAGTGGGGAACGAGTTGATGAAGCTGGACCCTCCATACCTGTACAG
species | Arabidopsis thaliana |
transcript | AT1G17220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACTTTGAAAAGAGGGGATGTTGTTGTTTGCGGAGAAGCTTTCGGAAAG GTACGAGCTTTEST: gi|125193629|gb|EL208583.1|EL208583
genomic: GGACTTTGAAAAGAGGGGATGTTGTTGTTTGCGGAGAAGCTTTCGGAAAGgtctatccca ... ctgtgtttagGTACGAGCTTT
EST: GGGGATGTTGTTGTTTGCGGAGAAGCTTTCGGAAAG GTACGAGCTTTATTTGATCACAGTGGGGAACGAGTTGATGAAGCTGGACCC
genomic: GGGGATGTTGTTGTTTGCGGAGAAGCTTTCGGAAAGgtctatccca ... ctgtgtttagGTACGAGCTTTATTTGATCACAGTGGGGAACGAGTTGATGAAGCTGGACCC
atatataatcgctaaaaacttacctactttggtcttgctctgtttctgtgtttagGTACGAGCTTTATTTGATCACAGTGGGGAACGAGTTGATGAAGCTGGACCCTCCATACCTGTACAG
aacttac putative branch site (score: 2)
tcttgctctgtttct putative PPT
taaaaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctatcccaaatttgggttttcctcaagtcacattgcgcagatgatatataatcgctaaaaacttacctactttggtcttgctctgtttctgtgtttagGTACGAGCTTTATTTGATCACAGTGGGGAACGAGTTGATGAAGCTGGACCCTCCATACCTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA