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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattaaatacttcatagtgaatataaagaatgggaacaaattgagttataactgtttttcctgcagGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAGGAACCATATGCTAATATGCACTACGGTGCTATAATAG

Basic information

species Arabidopsis thaliana
transcript AT1G16270.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164141589|gb|ES101468.1|ES101468
EST:     AAAGTTTCAGAGAAG                         GTCGATGTCTTCTC-TTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAG
genomic: AAAGTTTCAGAGAAGgtaaaattaa ... tttcctgcagGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAG
EST: gi|116459442|gb|EG502034.1|EG502034
EST:     GGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAG                         GTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGACTCTAACCGGCGAG
genomic: GGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAGgtaaaattaa ... tttcctgcagGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatagtgaatataaagaatgggaacaaattgagttataactgtttttcctgcagGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAGGAACCATATGCTAATATGCACTACGGTGCTATAATAG
                                  ttataac  putative branch site (score: 2)
                                        ctgtttttcct  CT-rich tract
      tgaatataaagaat  TA-rich tract