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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgaaacacaaagactgatttgcttgaatttattggttaatagatgagtctagattataaaactacgggttattgttattgtttttggttggcagCTCTTCACAAATCAGAAGCATACAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAAGTGGCTTAAAGTGTTCAACAAGTATGATCTCTACAGCAA

Basic information

species Arabidopsis thaliana
transcript AT1G14520.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164234871|gb|ES038628.1|ES038628
EST:     TACTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACG                         CTCTTCACAAATC
genomic: TACTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACGgtatttgaaa ... tggttggcagCTCTTCACAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgagtctagattataaaactacgggttattgttattgtttttggttggcagCTCTTCACAAATCAGAAGCATACAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAAGTGGCTTAAAGTGTTCAACAAGTATGATCTCTACAGCAA
                                      ttgttttt  CT-rich tract
                             ttattgttattgtttt  TA-rich tract