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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttactgcacaaattcaagaacattgtaagattaatcaaatgtgggtttttttggacaaagatataaacaaaaactatacgtttgtttttgtttgcagTATCACGTATGCAAGTAAAGCAGGAGAAAAACACATACCACTAGATTGGGCATTGGGGGCTTTTATACTAGATGTTGTAACACCCAATTCTGATTACAAT

Basic information

species Arabidopsis thaliana
transcript AT1G14240.4
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19740690|gb|AU226043.1|AU226043
EST:     ACTATATCAATGCTTCATGATAGTCTTGGTA-TGCTCTTGATGATGAAAG                         TATCACGTATGCAATTAAAGCAGGAGAAAAACACATACCACTAGATTGGGC
genomic: ACTATATCAATGCTTCATGATAGTCTTGGTATTGCTCTTGATGATGAAAGgtaaaattta ... ttgtttgcagTATCACGTATGCAAGTAAAGCAGGAGAAAAACACATACCACTAGATTGGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtttttttggacaaagatataaacaaaaactatacgtttgtttttgtttgcagTATCACGTATGCAAGTAAAGCAGGAGAAAAACACATACCACTAGATTGGGCATTGGGGGCTTTTATACTAGATGTTGTAACACCCAATTCTGATTACAAT
                                      tttgttttt  CT-rich tract
              aaagatataaacaaaa  TA-rich tract