1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtattctgttcaagttcctgatattacctctagagttacgtagaagttaaaaatgattacatgctagtaggagtgaaatttcctacgaactgattgtattcatggtgcaagttcagaaatttggtttagattcaaagatttgttcatcatatattgtacaccatcctcttctagGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTTGC
species | Arabidopsis thaliana |
transcript | AT1G12840.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCGTGTCGCAGATAATTTCAGGATTGCTGCTCGTGAGAAAGGATTCCAA GTCCGTGATTTTGAACAAAGTGEST: gi|125176565|gb|EL195866.1|EL195866
genomic: CTCGTGTCGCAGATAATTTCAGGATTGCTGCTCGTGAGAAAGGATTCCAAgtgagtattc ... cctcttctagGTCCGTGATTTTGAACAAAGTG
EST: CTCGTGTCGCAGATAATTTCAGGATTGCTGCTCGTGAGAAAGGATTCCAA GTCCGTGATTTTGAAEST: gi|125176810|gb|EL196111.1|EL196111
genomic: CTCGTGTCGCAGATAATTTCAGGATTGCTGCTCGTGAGAAAGGATTCCAAgtgagtattc ... cctcttctagGTCCGTGATTTTGAA
EST: AAAGGATTCCAA GTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAGEST: gi|124715275|gb|EH806677.1|EH806677
genomic: AAAGGATTCCAAgtgagtattc ... cctcttctagGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAG
EST: AAAGGATTCCAA GTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAG
genomic: AAAGGATTCCAAgtgagtattc ... cctcttctagGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAG
tttggtttagattcaaagatttgttcatcatatattgtacaccatcctcttctagGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTTGC
caccatcctcttct CT-rich tract
atcatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattctgttcaagttcctgatattacctctagagttacgtagaagttaaaaatgattacatgctagtaggagtgaaatttcctacgaactgattgtattcatggtgcaagttcagaaatttggtttagattcaaagatttgttcatcatatattgtacaccatcctcttctagGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC