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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcgttctgaatatcctgtgtttgtgcattttagtcccgtttatattggtccacattatatggtttgaaatggagtgtagcctgcgtatcatgttgttagtcgatgtttcatgatgtgaaagaggggcaagagataatttatttatgacaacttgtacagGGTTTCATAACCGATCATGAGCGAGCTTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAA

Basic information

species Arabidopsis thaliana
transcript AT1G12360.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12360.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 7
gtatgatcgttctgaatatcctgtgtttgtgcattttagtcccgtttatattggtccacattatatggtttgaaatggagtgtagcctgcgtatcatgttgttagtcgatgtttcatgatgtgaaagaggggcaagagataatttatttatgacaacttgtaca---gGGTTTCATAACCGATCATGAGCGAGCTTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAA
                                                             ||| |||||| |||  |  | | |        |||||| || |   |    |     || | |||       |    ||  | | ||||  |   ||| | ||   ||||||  | || ||| ||||| | ||||||||||| |||||||| |||||||| | |||||| | ||| ||||| || ||||||||||||||  | || |
------------------------------------------------------------gtatttggtttaaaa--ggctattgaacattagtcatgtggtaaactggaaat-----atctaaaattcctttagtttatcttatcttta-aatttcttttccataagGGTTTTGTCACTGATGATGAGAGGGCTTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125196744|gb|EL211698.1|EL211698
EST:     CATTGATAGCCAG                         GGTTTCATAACCGANCATGAGCGAGCTTTAGAGGATCTTTTTGGTGATGAG
genomic: CATTGATAGCCAGgtatgatcgt ... acttgtacagGGTTTCATAACCGATCATGAGCGAGCTTTAGAGGATCTTTTTGGTGATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcatgatgtgaaagaggggcaagagataatttatttatgacaacttgtacagGGTTTCATAACCGATCATGAGCGAGCTTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAA
                            ataatttatttatgac  TA-rich tract