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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcttatctttttaattttgctccttgttcaagaaatctggatagctaaattcagtgtgaccgacaaatctcttgcatattgtctttacagGAATAGAAAGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAGAATGCTCACAGCAATTGTTTTCTCTGGCAATCCTGTACGGTTTCTGTCA

Basic information

species Arabidopsis thaliana
transcript AT1G09760.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083045|gb|DR378804.1|DR378804
EST:     CTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAG                         GAATAGAAAGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAG
genomic: CTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGgtatttgctt ... gtctttacagGAATAGAAAGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAG
EST: gi|124823718|gb|EH908584.1|EH908584
EST:     TAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAG                         GAATAGAAAGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAG
genomic: TAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGgtatttgctt ... gtctttacagGAATAGAAAGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggatagctaaattcagtgtgaccgacaaatctcttgcatattgtctttacagGAATAGAAAGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAGAATGCTCACAGCAATTGTTTTCTCTGGCAATCCTGTACGGTTTCTGTCA
       agctaaa  putative branch site (score: 3)
                                           ttgtcttt  putative PPT
          taaattca  TA-rich tract