1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttaagcatccagcttttctaaaaacaccacttttgtgactcagacaggaaagacttgaaagtaatgttactgaccattcatgtctgtgtgtgtgtgtgtgtttgttacttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACA
species | Arabidopsis thaliana |
transcript | AT1G09430.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGGEST: gi|124797849|gb|EH887528.1|EH887528
genomic: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcat ... cttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGG
EST: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGEST: gi|125101220|gb|EL156403.1|EL156403
genomic: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcat ... cttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAG
EST: GAAGGGTCTTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCG
genomic: GAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAGgtttaagcat ... cttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCG
aatgttactgaccattcatgtctgtgtgtgtgtgtgtgtttgttacttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACA
tactgac putative branch site (score: 1)
ttacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaagcatccagcttttctaaaaacaccacttttgtgactcagacaggaaagacttgaaagtaatgttactgaccattcatgtctgtgtgtgtgtgtgtgtttgttacttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT