1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagtcacactttctctaattcttgagcttcctttcatgttcagaaaactcattgttatagggacccactgactgaaactcagctctgatcaatcttgaagagtattgatcaataacatcaaatcattctgtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAGAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAG
species | Arabidopsis thaliana |
transcript | AT1G09340.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAEST: gi|124983903|gb|EL056605.1|EL056605
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|125046472|gb|EL118741.1|EL118741
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: GATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|86080119|gb|DR375876.1|DR375876
genomic: GATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|116482238|gb|EG524830.1|EG524830
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAATTTTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|125315392|gb|EL329477.1|EL329477
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAEST: gi|124818141|gb|EH903007.1|EH903007
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTA
EST: CCCGGTTCCAAACTCTGGGATACAGATCTCTACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|125258838|gb|EL272923.1|EL272923
genomic: CCCGGTTCCAAACTCTGGGATACAGATCTC-ACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGEST: gi|124900632|gb|EH975250.1|EH975250
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTG
EST: GGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|124802210|gb|EH891215.1|EH891215
genomic: GGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAAEST: gi|124918260|gb|EH992116.1|EH992116
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|124820891|gb|EH905757.1|EH905757
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAAEST: gi|125187634|gb|EL202588.1|EL202588
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGEST: gi|86083439|gb|DR379198.1|DR379198
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTG
EST: ACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|124945686|gb|EL021672.1|EL021672
genomic: ACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: ACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAEST: gi|124957523|gb|EL032350.1|EL032350
genomic: ACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAACGTGEST: gi|124850207|gb|EH934644.1|EH934644
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAACGTG
EST: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAG GACTTGGCAACAGCCTTTCTCAA
genomic: TCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGgtcagtcaca ... gtaatttcagGACTTGGCAACAGCCTTTCTCAA
ctgatcaatcttgaagagtattgatcaataacatcaaatcattctgtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAGAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAG
caataac putative branch site (score: 2)
atcaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcacactttctctaattcttgagcttcctttcatgttcagaaaactcattgttatagggacccactgactgaaactcagctctgatcaatcttgaagagtattgatcaataacatcaaatcattctgtaatttcagGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAGAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA