Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagttgtttcactgtaattcaatgtatacatttgaaataatcattatgttaaattgattgttttgtttatgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG

Basic information

species Arabidopsis thaliana
transcript AT1G08860.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 5
-------gtaagcta-gttgtttcactgtaattcaatgt----atacatttgaaataatcattatgtta---aattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
         || | |  || |||      ||||| ||||     |   | |     |  |   | ||||   || |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| |||||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtctaccccagccgacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 5
-------gtaagcta-gttgtttcactgtaattcaatgtatacatttga-------aataatcattatgttaaattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
         || | |  || |||      ||||  |||| |   |  ||       |     ||   |  |||| |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| || ||
tgggtgtcaaatccacattttttggaaccaatttgatgtcttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGG

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 4
-------gtaagcta-gttgtttcactgtaattcaatgtat-------acatttgaaataatcattatgttaaattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
         || | |  || |||      ||||| |||| |       |||     |     ||   |  |||| |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || || ||||||||||||| ||| || ||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggacaaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 8
-------gtaagcta-gttgtttcactgtaattcaatgtatacatttga-------aataatcattatgttaaattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
         || | |  || |||      ||||| |||| |   |  ||       |     ||   |  |||| |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || || |||||||||||||  || || ||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTGCTGATCGG

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 3'ss of exon 7
-------gtaagcta-gttgtttcactgtaattcaatgt----atacatttgaaataatcattatgtta---aattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
         || | |  || |||      ||||| ||||     |   | |        |   | ||||   || |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| |||||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtctacccccgccgacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
-------gtaagcta-gttgtttcactgtaattcaatgtatacatttga-------aataatcattatgttaaattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
         || | |  || |||      ||||| |||| |   |  ||       |     ||   |  |||| |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || || ||||||||||||| ||| || ||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtatacatttgaaataatcattatgttaaattgattgttttgtttatgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG
                                aattgat  putative branch site (score: 4)
                                         ttttgttt  putative PPT
               aaataatcattatgtt  TA-rich tract