1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taataatattaccaaaagaaatattgaaataatcttaaaatgtcaaaagatgtgattactaactgtaatctttttctttctattattaatctaaatgaagGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACCGTCCGACAAGCTGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGAC
species | Arabidopsis thaliana |
transcript | AT1G08320.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGTCGCTCTCGGAAAGATCTCTAATCTCGAAGGCCTTATCCGCCAG GCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACC
genomic: TGGCTGTCGCTCTCGGAAAGATCTCTAATCTCGAAGGCTTTATCCGCCAGgttccatttt ... ctaaatgaagGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACC
aaagatgtgattactaactgtaatctttttctttctattattaatctaaatgaagGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACCGTCCGACAAGCTGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGAC
taatctttttctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataatattaccaaaagaaatattgaaataatcttaaaatgtcaaaagatgtgattactaactgtaatctttttctttctattattaatctaaatgaagGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACCGTCCGACAAGCTGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - -taccaaa
- - - - - - caaaaga
- - - - - - - - agaaata
- - - - - - - - - - - - -gaaataa