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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaaagaatattttacaaatcttgttttgtaagtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA

Basic information

species Arabidopsis thaliana
transcript AT1G06820.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 7
gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaaagaatattttacaaatcttgttttg-taagtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA
              | | | |  | |   || | | |     | || | |   || |  |  |   |  |||||   | | || | ||   | || || ||   ||| |   ||| || || || |||| | || | |||||  |||| ||  |||| || || ||    || |||||||| |||||||| ||||||||||| |||||||| ||
-------------gtaattcaaattatcttcaattggaactttcaaaagaggaaaaaactagctctttctgtttcactcattgcagtttttaatt-tacttgaatgtac---agGAAAACTCTTGAAAGAAAAAGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTATGTCAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAA

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G106531_T01 (Zea mays), 3'ss of exon 7
gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaaagaatattttacaaatcttgttttgtaagtgtacttaaaacttgtattttgctgtgc-tttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA---
            |||  || ||||| || || | | |     |||| |||     | ||| |      || |    ||  || | ||  || |||| ||||  ||    |  ||| || ||  | ||||  |||   |||||  |||| ||  |||| || || ||    ||||| ||||| |||||||| ||||||||||| |||||||| ||   
----------gtaatt-ctaatgtatct-tcaattggaacattaaaaaaactagttctttca------ttttcacttatttgcagttttaaattgttttttcttgaatgtacagGAAAACTCGTGAAAGAGGAA---CTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGC

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 7
----gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaa-----agaatattttacaaatcttgttttgta--agtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA
    ||   | | || |||   ||||   | | |    ||   |   || || ||        || |||  |     |  ||  ||   |||  || |  || ||| ||  ||||    | |||| ||| |  | || |        ||||| ||||||||||| || ||||||||||| || || || |||||||| |||||||||||||||||||| |||||
gttggttccaaataagaatt-tttataagattttttgttaatatttcaatgataatctccgatatgtttctctgccttcattcggtcttagttaacctctaa-ttgcataatgctacattgtagGAAAGTTACTGAAGGACATTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 7
----gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaa----agaatat-tttacaaatcttgttttgtaagtg--tacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA
    ||   | | || ||    | ||   | | |    ||   |   || || ||    ||  ||| |||      |||  || ||   |   || |    | ||| ||  || |    | |||| ||| |  | || || |     ||||| ||||||||||| || ||||||||||| || || || |||||||| |||||||||||||||||||| |||||
gttggttccaaataagaa-atttcataagattttttgttaatatttcaatgataatctcagtgtatgtttctctgccttcattagttcttagctaatccctaattgcataatgttacattgtagGAAAGTTACTGAAGGGCGTTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 7
-----------------gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaaagaatattttacaaatcttgttttgtaagtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA
                  |    ||     |||| |||| |  |         || |  |          | |  | ||  | |  |  |  |||| |        ||  |  |  ||  | |  |  ||| ||||| ||||| || ||| | ||||| |||||||| |  || || || || || || || ||||| |||||||||||||| ||||||||||| |||||
gttagttctgcaaggatcttttggatgtttatgagttattttgccaagttcctgccttgttgtaccttgcactgctatatcagttct-ctcagtaattaattaaccaaactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacaaatcttgttttgtaagtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA
                                       ttttgct  CT-rich tract
                           ttaaaacttgtatttt  TA-rich tract