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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctgcctttatctcctttgcgttgtgttcatgtctatcgttctctagaaaagttgcatcaggctcttatagtattgacgcaaaacaacctggctaatgaacacatacattttccgttatttgctcttttgtcttttttccagGTGCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGGGTCGCATTTATACGCGTGAGTTCTTAACAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G06690.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084281|gb|DR380040.1|DR380040
EST:     TTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAG                         GTGCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGG
genomic: TTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGgtaatctgcc ... ttttttccagGTGCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGG
EST: gi|124975471|gb|EL048959.1|EL048959
EST:     GAGTTACTTTAATTGCATATTCCCCCATCGCTCAAG                         GTGCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGG
genomic: GAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGgtaatctgcc ... ttttttccagGTGCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggctaatgaacacatacattttccgttatttgctcttttgtcttttttccagGTGCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGGGTCGCATTTATACGCGTGAGTTCTTAACAAAG
   ggctaat  putative branch site (score: 3)
                   cattttccgttatttg  putative PPT
                atacatttt  TA-rich tract