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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagctttataaacattgtagccatcaaattttgaagtgaatgcccgaaagaagtgaaagcatggcctgagacgtagtaatttgtcccaacttcttatagatgagttgttttcattgattatttctcattatcacagATATGCTATGAGTTTTGCTGCAAATGAATTGAAGATGATTTACGTGAAGAGAACACCGGAGACCAACAAAGCCATCCACGTTGTTTCAAGTGGGTTCAAA

Basic information

species Arabidopsis thaliana
transcript AT1G06290.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06290.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G14060.1 (Glycine max), 3'ss of exon 7
gtaaggagctttataaacattgtagccatcaaattttgaagtgaatgcccgaaagaagtgaaagcatggcctgagacgtagtaatttgtcccaacttcttatagatgagttgttttcattgattatttctcattatcacagATATGCTATGAGTTTTGCTGCAAATGAATTGAAGATGATTTACGTGAAGAGAACACCGGAGACCAACAAAGCCATCCACGTTGTTTCAAGTGGGTTCAAA
                           ||  |||    |||||| |  || |    |   |     |||    | | | |  ||  |    |  ||| ||||            ||||||  || || ||  ||   |||||||||| ||||||||||||||||||||  |||| ||||| || || || ||||||||  || | |||||||| || ||  ||||||| ||||  | ||| 
-------------------------tgatttaataa-aaagtgactatcctactttaaccattttgtggatataaatggaccaaaatagtac--ctttttatg-----------ttcatt--ttgttacttttttctacagATATGCAATGAGTTTTGCTGCAAATGAGCTGAAAATGATGTATGTCAACAGAACACCTAAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCTTACAAG

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 3'ss of exon 7
gtaaggagctttataaacattgtagccatcaaattttgaagtgaatgcccgaaagaagtgaaagcatggcctgagacgtagtaatttgtcccaacttcttatagatgagttgttttcattgattatttctcat-----tatcacagATATGCTATGAGTTTTGCTGCAAATGAATTGAAGATGATTTACGTGAAGAGAACACCGGAGACCAACAAAGCCATCCACGTTGTTTCAAGTGGGTTCAAA
                                         |||||     ||   ||| |     | | |   |  | |   || |||   || |   |  ||||  | |||| | |||  ||  | |||||     |   ||||||||||||||||||||||||| ||  | ||||| ||||| || |||||| | ||||| ||  | |||||| ||||||| |||||||||||||  ||||| 
----------------------------------------ttgaatatgtaaactgagtcaccagttagtccttggagga--tatatgtttaaaatggatg-agat--gctgttctgatttgttgct-ctcatgcctatgcaacagATATGCTATGAGTTTTGCTGCGAACTACTTGAAAATGATATATGTGAAGCGGACACCTGAATCTAACAAAACCATCCATGTTGTTTCAAGTGCATTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcccaacttcttatagatgagttgttttcattgattatttctcattatcacagATATGCTATGAGTTTTGCTGCAAATGAATTGAAGATGATTTACGTGAAGAGAACACCGGAGACCAACAAAGCCATCCACGTTGTTTCAAGTGGGTTCAAA
                              cattgat  putative branch site (score: 4)
                                       tttctcatt  putative PPT
                          ttttcattgattattt  TA-rich tract