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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctaaaatcaacgaattgaattggttttctttatgtcattttgcataccttatactggcaatactaatgggttcaatgtttcactgaaatgtctgcagCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA

Basic information

species Arabidopsis thaliana
transcript AT1G05170.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G007185_T01 (Zea mays), 3'ss of exon 7
gtaagttctaaaatc-aacgaattgaat-tggttttctttatgtcattttgcataccttatactggcaatactaatgggttcaatgtttcactgaaatgtctgcagCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA
    ||  | |  |  | |  ||||||  ||   || | |     | ||  | |    | | |  |||| | || |   |  ||  |  || |   | || ||||||||| |||||  | |   |    | |||      ||| ||  |||| || ||||| |||||||| |||||||||||||||||| | ||
----gtgttgatttttagcatattgaacctgacattatattcagtaattgtctttttatgttc-agcaacatta-tatttctaacatgacaattttacgtttgcagCAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAA

upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA12G10520.1 (Glycine max), 3'ss of exon 7
---------------------gtaagttctaaaat-caacgaattgaattggttttctttat-gtcattttgcat-accttatactggca-atactaatgggttcaatgtttcactgaaatgtctgcagCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA
                      |||  ||| |  |  ||     ||| ||   | | | ||| || | |   ||| |  || |  |   |  ||||  | |  | |   ||  | |        | ||||||| || || |||||||| |||||||| ||   |||||||||| | || ||||| |||||||||||||| |||||||| || |||||
gtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcagCAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA

upper sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G46230.1 (Glycine max), 3'ss of exon 7
---------------------------------------------------------------------------------------gtaagttctaaaatcaacgaattgaattggtttt----ctttat-gtcattttgcat-accttatactggca-atactaatgggttcaatgtttcactgaaatgtctgcagCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA
                                                                                          | | ||||    ||  ||  | ||  |||||     | ||| || | |   ||| |  || |  | | |  ||||  | |  | | |||   | |     |  | ||||||| || ||  ||||||| ||||| || ||   |||||||||| | || ||||| |||||||||||||| |||||||| || |||||
gtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataccttatactggcaatactaatgggttcaatgtttcactgaaatgtctgcagCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA
                  tactaat  putative branch site (score: 1)
                aatactaat  TA-rich tract