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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctattctctctctctccctttctcttgttgtgcctcttaagtacatcaagctttatatggtgtaatcagtatctcttaactacatgtatattgtagGGTGTTTTGAGAGTCAACCAATTAATCGAAATCCGACCTGGTATCGTTACCAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACTCTCGCATCA

Basic information

species Arabidopsis thaliana
transcript AT1G04170.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194432|gb|EL209386.1|EL209386
EST:     ATGAGGTTGATGAGATCAAAGGTGGAGTTGCAGGTGGAAGTATCCTACGG                         GGTGTTTTGAGAGTCAACCAATTAATCGAAATC
genomic: ATGAGGTTGATGAGATCAAAGGTGGAGTTGCAGGTGGAAGTATCCTACGGgtatctattc ... tatattgtagGGTGTTTTGAGAGTCAACCAATTAATCGAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatcaagctttatatggtgtaatcagtatctcttaactacatgtatattgtagGGTGTTTTGAGAGTCAACCAATTAATCGAAATCCGACCTGGTATCGTTACCAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACTCTCGCATCA
                                tcttaac  putative branch site (score: 2)
                                          atgtatatt  TA-rich tract