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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctacatattgaggattgagttaatgttctgccactttgtgggcttactctattaactataaatggcagGTGACTGACATTGATTCATCAGATTCCGCAATGACAAGATCAACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACCAACACACAAA

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04140.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 7
------------gtgagctacatattgaggattgagtt-aatgttctgccact--ttgtgggcttactctattaacta--taaatggcagGTGACTGACATTGATTCATCAGATTCCGCAATGACAAGATCAACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACCAACACACAAA
             | |  |   | |  || ||||  ||  ||  | | |   |  |  ||       |  |||||     | |   |||||| | |||  ||||||| ||||||||  ||||||||||| |||||||||| ||||| ||||  ||||| || |||||  | || ||  | || |  ||  
gtgattattgttattatttttttttgaagtattggatttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgagttaatgttctgccactttgtgggcttactctattaactataaatggcagGTGACTGACATTGATTCATCAGATTCCGCAATGACAAGATCAACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACCAACACACAAA
                                    tattaac  putative branch site (score: 1)
                                  tctattaactataaat  TA-rich tract