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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattcacagttttcttgctgtggtgttttctcgtttgtttgtctatttatgagacaagtttgcatatttttttgttactggagatgcacataacttaaaggtttatttgtattcgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT

Basic information

species Arabidopsis thaliana
transcript AT1G03000.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G445617_T02 (Zea mays), 3'ss of exon 8
gtaacattcacagttttcttgctgtggtgttttctcgtttgtttgtctatttatgagacaagtttgcatatttttttgttactggagatgcacataacttaaaggtttatttgtattcgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTC-CTGCATAAAGATTTATTTT
               |      | || |  |  ||     |  | ||   | ||  | ||    || ||  |   | || | |  |     || |  ||   ||    | |||| ||  |||||||| ||||| |||||||| |||||||||||||| ||||||||||| |     ||  | || ||  ||||  ||  |    ||  ||  |  | ||  | 
--------------gtaaacattttgattctagctttcaggactatcagctgataggcca----tgaatcgtacgtagtgatttta-----acttgcctctgagtacaaattgttttt-tagGTTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTAGAGGATGTGAAAAAGGTTATTCTAGATACTATTCAGGTAAATTGGACTTGATTCAACTGTAAAT-

upper sequence: AT1G03000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA19G39580.1 (Glycine max), 3'ss of exon 7
---------------------------------------------gtaacattcacagttttc--ttgctgtggtgttttctcgtttgtttgtctatttatgagacaagtttgcatatttttttgttactggagatgcacataacttaaaggtttatttgtattc-gtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT
                                              |||     ||| ||| |  ||| | || ||        | | | | |   |     |||   |||     | ||   |||| |   |    || | |  ||||   |  |||| | ||  | ||||||| |||||||||||||| ||||||||||||||||| ||||| || | ||| ||  |||| || |||||                             
gtagattaagtgatcaggcttttatgatggttttcatgtctgcatttaagcagaacaatttactgttgttttgatgcccaaaaatgtatatatac-tgcgaaagatgtgttctgtgaattagatgttccacaatgcacagaaattttaagtatggatttttcttttgcagGTTCCGAATGTGAAATGGGAGGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAG----------------------------

upper sequence: AT1G03000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA03G36930.1 (Glycine max), 3'ss of exon 12
---------------------------------------------gtaacattcacagttttct--tgctgtggtgttttctcgtttgtttgtctatttatgagacaagttt--gcatatttttttgttactggagatgcacataacttaaaggttta--tttgtattcgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT
                                              |||     ||| ||| ||  || | || ||        | | | | |         ||||| |||   | | |    | |||| ||  |    || | |  || |||  |    |||   || | ||||||| ||| |||||||||| ||||||||||||||||| ||| | || |  || ||  |||| || |||||                             
gtaaattgagtgatcaggcttttatgatggttttcttgtctgcatttaagcagaacaatttactgttgttttgatgccaaaaaatgtatatata-gcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG----------------------------

upper sequence: AT1G03000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 3'ss of exon 7
------------gtaacattcacagttttcttgctgtggtgttttctcgtttgtttgtctatttatgaga-----caagtttgcata---------------tttttttgttactggaga----------tgcacataacttaaaggtttatttgtatt--cgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT
            | || | |  |    ||  |||  || ||||   |  |  |||||   ||| |  | |      || ||| | |                 | |||| || || ||||          |||   ||  |   ||  ||  |||  ||  | |||||||| ||||| |||||||| ||||||||||||||||||||||||||||  |||||  | || || |||||                             
gtaaactgaggagcaatagtagctaaatttgtgccatgatgttacattctgggtttgatcattcagcaaaagttttaaattttcttgagcaggcagtgagttctcttttcttcctagagaaatctattgctgcctgtatttctgagtctttcttgctttgacctagGTTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTTGAGGATGTGAAGAAGTCGATTCTAGATACTGTTCAG----------------------------

upper sequence: AT1G03000.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: PP1S68_6V6.1 (Physcomitrella patens), 3'ss of exon 8
gtaacattcacagttttcttgctgtggtgttttctcgtttgtttgtctatttatgagacaagtttgcatatttttttgttactggagatgcacataacttaaaggtttat-ttgtattcgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT
                       ||   |   ||| || | | |||   ||    |||    |||||||    |     |      | | |   ||  || ||  ||  | |||||||   || ||||||||||||||||||| |||||||| ||||||||||||||||| |   | ||  | |||||||| ||                             
----------------------ggtcaagaagtctagtgtatatgttgcttcgacaga-gcatttgcatcccgtgcatgtggcattgttactactattttcaatattgttgttgtatttccagATTCCAAATGTGAAATGGGAAGATGTTGGGGGGCTTGAGGATGTGAAAAAGGCTATTCTCGACACAGTGCAG----------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttttttgttactggagatgcacataacttaaaggtttatttgtattcgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT
                        acataac  putative branch site (score: 3)
                               ttaaaggtttattt  TA-rich tract