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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctttgtggattatagtttctttctgctgtcagtttccaacagttacacttgttaatctcttttgttgctattctcatatacttaaagagagtataaatcatttgtatatgctccatggataatttggttgacagataaagcgtattccaagcttctgatatatctagtactttctttggtgaatctatatagGGTAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTACCGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTAC

Basic information

species Arabidopsis thaliana
transcript AT1G02740.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02740.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv18s0001g09710.t01 (Vitis vinifera), 3'ss of exon 7
gtaagctctttgtggattatagtttctttctgctgtcagtttccaacagttacacttgttaatctcttttgttgctattctcatatacttaaagagagtataaatcatttgtat-atgct-ccatggataa--tttggttgacagataaa-gcgtattccaagcttctgatatatc-tagtactttctttggtgaatctatatagGGTAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTACCGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTAC
                                                                                                     |  |||||| ||| |||     ||   |||  |||  |  | |  |  | |    || | |  || | || |||  | |||     |||| ||    || | ||| || | |||||    |  |||||||||||||| || ||||| |||||||||||||| || || |||||| | || ||  | |  || ||  | ||||| 
-----------------------------------------------------------------------------------------------------atgtcatttctattatgtaattataattaaattttaatatataattgtatgtaatttgctaaattttaatgtataattgtatggaatttgttg----tacaaagGATATCTGATTCGGCTGGAGAAATTCTGAAAGGGTTACGTTGTTACTTTGACAAAGCATTGCCAGTGATGCTTCTGTATGAAAGGGAGCGTCAACAGTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcgtattccaagcttctgatatatctagtactttctttggtgaatctatatagGGTAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTACCGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTAC
               ttctgat  putative branch site (score: 3)
                                            aatctatata  TA-rich tract