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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaatattagatatgagtgagatgataagtacaaaggagatgatataacatacacacattcaactttggaacgcagGAGGAGGCATCCTGTAACAAGGTAGAGGAGCAAGAGAGAGCAAATGGTCAGTGCGGATTGACATTCCATTTACCGAGAGTAGATTATGATTATTTGGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G02090.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164154670|gb|EL971148.1|EL971148
EST:     GAACCAAGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAG                         GAGGAGGCATCCTGTAACAAGGTAGAGGAGCAAGAGAG
genomic: GAACCAAGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAGgtaacgaata ... tggaacgcagGAGGAGGCATCCTGTAACAAGGTAGAGGAGCAAGAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgataagtacaaaggagatgatataacatacacacattcaactttggaacgcagGAGGAGGCATCCTGTAACAAGGTAGAGGAGCAAGAGAGAGCAAATGGTCAGTGCGGATTGACATTCCATTTACCGAGAGTAGATTATGATTATTTGGTTG
                     atataac  putative branch site (score: 3)
                     atataacata  TA-rich tract