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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgctgaattctgtgtgaaatgcctcttttttaattattattattctatcatgtaacgacaatttcatgggtttcttcattttctgatgggtagaaattcagGCTCAACCTGCGCCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATG

Basic information

species Arabidopsis thaliana
transcript AT1G01920.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01920.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA09G39970.1 (Glycine max), 3'ss of exon 8
gtctgctgaattctgtgtgaaatgcctcttttttaattattattattctatcatgtaacgacaatttcatgggtttcttcattttctgatgggtagaaattcagGCTCAACCTGCGCCATCTG---TAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATG
                                                                                    |          || | |||| |  ||   | | ||| |     |    | ||||| ||  | ||||||||||| ||||| ||||||||||||||||| |||||||
-----------------------------------------------------------------------------------gttaagaaatctgacaatcagaccaaagaagggacatgtaacccaatgacagGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgtaacgacaatttcatgggtttcttcattttctgatgggtagaaattcagGCTCAACCTGCGCCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATG
                                  ttctgat  putative branch site (score: 3)
             aatttcat  TA-rich tract