Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttaccagatctcatttcaagaaaacagtttgcttatatatatatgtgtgtgttgcaatcttgggatcaaaccaatgaataaaagccatcaatctctcgcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAAAAGGGAAACAAGGAAAGGCGAACTAGTTTCATTGTCCACATGTTCCATATATAGTTTGTGT

Basic information

species Arabidopsis thaliana
transcript AT1G01820.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164106183|gb|ES180046.1|ES180046
EST:     GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAG                         CTATTGCCGTCACATCCCAAGTCCAAGATGG
genomic: GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGgtatatttac ... gcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGG
EST: gi|164231011|gb|ES119501.1|ES119501
EST:     GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAG                         CTATTGCCGTCACATCCCAAGTCCAAGATGGTC
genomic: GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGgtatatttac ... gcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGGTC
EST: gi|164167753|gb|ES042461.1|ES042461
EST:     GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAG                         CTATTGCCGTCACATCCCAAGTCCAAGAT
genomic: GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGgtatatttac ... gcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGAT
EST: gi|86078612|gb|DR374369.1|DR374369
EST:     GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAG                         CTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAAAAGGGAAACAAG
genomic: GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGgtatatttac ... gcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAAAAGGGAAACAAG
EST: gi|124785018|gb|EH874697.1|EH874697
EST:     GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAG                         CTATTGCCGTCACATCCCAAGTCCAAGATGGT
genomic: GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGgtatatttac ... gcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGGT
EST: gi|86081227|gb|DR376984.1|DR376984
EST:     GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAG                         CTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAAAAGGGAAACAAG
genomic: GAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGgtatatttac ... gcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAAAAGGGAAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaatcttgggatcaaaccaatgaataaaagccatcaatctctcgcttgtgcagCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAAAAGGGAAACAAGGAAAGGCGAACTAGTTTCATTGTCCACATGTTCCATATATAGTTTGTGT
                                       tctctcgctt  CT-rich tract
                    aatgaataaaa  TA-rich tract