1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcctttttcttcagtgttcctccttattcatctctattgatctctcaacaagtattagtttttccctttaactctaatatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT
species | Arabidopsis thaliana |
transcript | AT1G01050.1 |
intron # | 7 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACT ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGEST: gi|164058901|gb|ES078505.1|ES078505
genomic: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTG
EST: CTCTCTGAAATCCGTCGTTTCTTCGAAGACT ACAAGAGAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCEST: gi|47828474|gb|CK118158.1|CK118158
genomic: CTCTCTGAAATCCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCC
EST: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACT ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGEST: gi|86078040|gb|DR373797.1|DR373797
genomic: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTG
EST: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACT ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGEST: gi|125207259|gb|EL222213.1|EL222213
genomic: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTG
EST: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACT ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTEST: gi|125292094|gb|EL306179.1|EL306179
genomic: AGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATT
EST: CCGTCGTTTCTTCGAAGACT ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGEST: gi|124704845|gb|EH796247.1|EH796247
genomic: CCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTG
EST: CCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACT ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTG
genomic: CCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTgtatcctttt ... tatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTG
tctattgatctctcaacaagtattagtttttccctttaactctaatatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT
ccctttaac putative branch site
aagtattagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttttcttcagtgttcctccttattcatctctattgatctctcaacaagtattagtttttccctttaactctaatatcttacagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC