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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcagatataaacttttctttctgttttgtcaaattttcttgtggattgaacaatttgtggtgatgtgaatgttgtggtgatgcagGTTTATTTCCATGAGATACCAGAACAAGTCATTGACGGTCTT

Basic information

species Arabidopsis thaliana
transcript AT5G66550.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124762824|gb|EH852954.1|EH852954
EST:     TTAGAAACTTGAAAACTGGAGTTAAAAA-GGAGGATGGGACAAAGCTGAG                         GTTTATTTCCATG
genomic: TTAGAAACTTGAAAACTGGAGTTAAAAAAGGAGGATGGGACAAAGCTGAGgtacgcagat ... ggtgatgcagGTTTATTTCCATG
EST: gi|124838164|gb|EH922603.1|EH922603
EST:     AGTTAAAAAAGGAAGGATGGGACAAAGCTGAG                         GTTTATTTCCATGAGATACCAGAACAAGTCATTGACGGTCTT
genomic: AGTTAAAAAAGG-AGGATGGGACAAAGCTGAGgtacgcagat ... ggtgatgcagGTTTATTTCCATGAGATACCAGAACAAGTCATTGACGGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattttcttgtggattgaacaatttgtggtgatgtgaatgttgtggtgatgcagGTTTATTTCCATGAGATACCAGAACAAGTCATTGACGGTCTT
                  aacaattt  TA-rich tract