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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaaccaaaagcaaactctctagacactgttgttgccaattataccactgactaacttactcaccaattgaatttgccaatcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G05350.1 (Glycine max), 3'ss of exon 6
-gtcaa--accaaaagcaaactctctagacactgttgttgccaat-tataccactgacta-acttactcaccaattgaatttgcca-atcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG
  |  |   |   | |  ||    | | |  ||    ||   |   | | |   | | |  ||  | |     ||| |   ||      ||||| || |||||||||||||||| ||||| ||||||||||| || |||||||||||| |||| |||||||||
acttgactgctgcatgtgaagctacaaaaatctaccattattagcatgtgcttgtaagtggacaaatttgattattaaccatgttttgacatatatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCTACAAGCAGCTCATTGCTTTACAAGGAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA11G08230.1 (Glycine max), 3'ss of exon 6
-----------gtcaaaccaaaagcaaactctctagacactgttgttgccaattataccactgactaacttactcaccaattgaatttgccaatcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG
            |||    | ||| ||   |  ||| ||   |    | |   |  |  |   |   | ||   |    |    |||||   || || | || |||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||||
gacatattttaatcacgtaataagtaataaccataggcaaaataaa-gtctgctgcataagaaatgtatttgtacgt-gaccatatttg---atgatttatgtagTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTACTTTATAAGGAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA16G23710.1 (Glycine max), 3'ss of exon 6
---------gtcaaaccaaaagc-aaactctctagacactgttgttgccaattataccactgacta-acttactcaccaattgaatttgccaatcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG
         |    |    |||| ||| | | |  ||| ||||  |   | || |   | ||  || | ||  | |  ||   |  ||     | | ||||| |||||||||||||||| ||||| || |||||||| || |||||||||||| ||||||| ||||||
gacttgactgctgcatgtgaagctaaatttttttaacaatgttagtatgagtt-tgtaagtggatacatttgattattaacccatgttt----tgacatgtgtagTTCAATGGTTTGGCATGGCTCTTTTTGGGTGTCCCTACAAGCAGCTCATTGCTATATAAGGAG

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 3'ss of exon 6
-------gtcaaaccaaaagcaaactctctagacactgttgttg-ccaattataccactgactaacttactcaccaattgaatttgccaatcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG
        |        | |  |  |     ||||  || || | |   |||||    |   ||    | |    | || ||  |    |       ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||||
gattaactttttgttggatgtca-tttgagggacagagtagtagactggttatatatgtagatagtccagt-gtgattttaaccttttgacatgtcttgcagTTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTTCCCACAAGCAGCTCACTACTCTATAAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194160|gb|EL209114.1|EL209114
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCC
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCC
EST: gi|125252710|gb|EL266795.1|EL266795
EST:     AGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCAACGAAGGACTACAAG                         TTCAATGGTTTGGCGTGGCT
genomic: AGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCA-CGA-GGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCT
EST: gi|125249464|gb|EL263549.1|EL263549
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTT
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTT
EST: gi|124705487|gb|EH796889.1|EH796889
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
EST: gi|125281034|gb|EL295119.1|EL295119
EST:     ATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: ATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125030092|gb|EL102361.1|EL102361
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGG
EST: gi|125025805|gb|EL098074.1|EL098074
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTG
EST: gi|125124559|gb|EL170453.1|EL170453
EST:     TTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125176972|gb|EL196273.1|EL196273
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTA
EST: gi|125305798|gb|EL319883.1|EL319883
EST:     TGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGG-TGTACCCACAAGCAGCTCACTG
genomic: TGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|164128408|gb|ES207440.1|ES207440
EST:     GTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: GTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124723932|gb|EH815334.1|EH815334
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTG
EST: gi|164013834|gb|ES206410.1|ES206410
EST:     AGATCATTTTTTGTTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
genomic: AGATCA-TTTTTG-TGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
EST: gi|124979349|gb|EL052411.1|EL052411
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
EST: gi|164190036|gb|ES169699.1|ES169699
EST:     AATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: AATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125317457|gb|EL331542.1|EL331542
EST:     ATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: ATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125140233|gb|EL178584.1|EL178584
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCG
EST: gi|124881218|gb|EH960120.1|EH960120
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATAGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAAT-GGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
EST: gi|125067105|gb|EL133733.1|EL133733
EST:     CACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: CACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125003935|gb|EL076204.1|EL076204
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT
EST: gi|124987734|gb|EL060171.1|EL060171
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTA
EST: gi|125233677|gb|EL247762.1|EL247762
EST:     CACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGG-TGTACCCACAAGCAGCTCACTG
genomic: CACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124748937|gb|EH839067.1|EH839067
EST:     ATCATTTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: ATCA-TTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124916343|gb|EH990217.1|EH990217
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCAC
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCAC
EST: gi|124945923|gb|EL021889.1|EL021889
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTC
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTC
EST: gi|124866960|gb|EH951397.1|EH951397
EST:     AGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: AGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124846061|gb|EH930498.1|EH930498
EST:     CGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT
genomic: CGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT
EST: gi|124720339|gb|EH811741.1|EH811741
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
EST: gi|125177089|gb|EL196390.1|EL196390
EST:     GGAAAATGTTCTTTGAGGTAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: GGAAAATGTTCTTTGAGG-AGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125085052|gb|EL145034.1|EL145034
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
EST: gi|125107301|gb|EL160657.1|EL160657
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGG
EST: gi|124990067|gb|EL062336.1|EL062336
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
EST: gi|124891403|gb|EH970305.1|EH970305
EST:     AAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTACACT
genomic: AAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT-CACT
EST: gi|124929276|gb|EL006836.1|EL006836
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCA
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCA
EST: gi|124739899|gb|EH831061.1|EH831061
EST:     CACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: CACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|116446281|gb|EG488873.1|EG488873
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124717261|gb|EH808663.1|EH808663
EST:     TTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124749541|gb|EH839671.1|EH839671
EST:     ATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: ATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125044167|gb|EL116436.1|EL116436
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGG
EST: gi|125228727|gb|EL242812.1|EL242812
EST:     TCAGATCATTTTTGTGG-AAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
EST: gi|125267077|gb|EL281162.1|EL281162
EST:     CAGATCATTTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGTCTTTTCTT
genomic: CAGATCA-TTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGG-CTTTTCTT
EST: gi|125140204|gb|EL178570.1|EL178570
EST:     TTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125223713|gb|EL237798.1|EL237798
EST:     CAGATCATTTTTGTTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
genomic: CAGATCATTTTTG-TGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCA
EST: gi|124746609|gb|EH836929.1|EH836929
EST:     TCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT
genomic: TCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCT
EST: gi|125267546|gb|EL281631.1|EL281631
EST:     AAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: AAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125306590|gb|EL320675.1|EL320675
EST:     TGGAAAATGTTCTTTGAGGAGCACGAGGACTTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACT
genomic: TGGAAAATGTTCTTTGAGGAGCACGAGGAC-TACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACT
EST: gi|47828632|gb|CK118316.1|CK118316
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124798615|gb|EH888294.1|EH888294
EST:     CAGATCTATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
genomic: CAGATC-ATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAG
EST: gi|125183879|gb|EL198833.1|EL198833
EST:     GTGGAAAATGTTCTTTGAGGAGCACGAGGACTTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTNACT
genomic: GTGGAAAATGTTCTTTGAGGAGCACGAGGAC-TACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACT
EST: gi|125228286|gb|EL242371.1|EL242371
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTG
EST: gi|124714978|gb|EH806380.1|EH806380
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
EST: gi|124837400|gb|EH921839.1|EH921839
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
EST: gi|125139945|gb|EL178455.1|EL178455
EST:     TTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125052287|gb|EL124126.1|EL124126
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGG
EST: gi|86051158|gb|DR346913.1|DR346913
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125194980|gb|EL209934.1|EL209934
EST:     ATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: ATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125121512|gb|EL168657.1|EL168657
EST:     AATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: AATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|86078472|gb|DR374229.1|DR374229
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGT
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGT
EST: gi|124723828|gb|EH815230.1|EH815230
EST:     CAGATCATTTTTGTTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
genomic: CAGATCATTTTTG-TGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAG
EST: gi|125124978|gb|EL170644.1|EL170644
EST:     GCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: GCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|47829213|gb|CK118897.1|CK118897
EST:     TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: TCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125113346|gb|EL164195.1|EL164195
EST:     GGAAAATGTTCTTTGTAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: GGAAAATGTTCTTTG-AGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|86085143|gb|DR380902.1|DR380902
EST:     CTTTGAGGAGCACGAGGACTACAAG                         TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCAGAAGCAGCTCACTG
genomic: CTTTGAGGAGCACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|124843833|gb|EH928270.1|EH928270
EST:     ACGAGGACTACAAG                         TACAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
genomic: ACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTG
EST: gi|125307151|gb|EL321236.1|EL321236
EST:     CACGAGGACTACAAG                         TTCAATAGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTC
genomic: CACGAGGACTACAAGgtcaaaccaa ... atatgtgcagTTCAAT-GGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattataccactgactaacttactcaccaattgaatttgccaatcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG
                    tactcac  putative branch site (score: 1)
                            aattgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaaaccaaaagcaaactctctagacactgttgttgccaattataccactgactaacttactcaccaattgaatttgccaatcatatgtgcagTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG