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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgcctacaaactttgaagttatatacaaaaaagtgacaaagaataagtattgcttatacgtgcagctttttctctacttatgcattgtttattgctgtagGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACTTTTGAATGGAAAACCAATC

Basic information

species Arabidopsis thaliana
transcript AT5G64960.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64960.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 7
--------gtatgtatgcctacaaactttgaagttatata-caaaaaagtgacaaagaataagtattgctta----tacgtgcagctttttctctactt-atgcat-----tgtttattgctgtagGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACTTTTGAATGGAAAACCAATC
         ||  |   |||      ||| ||  |   || |  ||  ||     |   |   | ||    |    || |  | ||||||  | || || || ||      | || |||    |||||| || |||||| | || || || || || ||||| || ||  ||||||||||||| || || || || |||||||| |||||| ||||||||||||| 
gtaaaatattacattaacctcatgtgttttaaactgcctagctcaattgttgtgcatgttgcatcttttccaagaataagctccgcttttcatttagttgattcaggtttatattgatttgcatagGCCACCAGAATTGCTGCTAGGAGCCACAAAGTATGGCCCTGCTGTTGACATGTGGTCCGTCGGTTGTATCTTTGCTGAGCTTTTGTATGGAAAACCAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125291641|gb|EL305726.1|EL305726
EST:     TCACTTTGTGGTATAG                         G-CCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT
genomic: TCACTTTGTGGTATAGgtatgtatgc ... attgctgtagGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT
EST: gi|86059280|gb|DR355037.1|DR355037
EST:     CATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAG                         GCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT
genomic: CATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAGgtatgtatgc ... attgctgtagGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT
EST: gi|86059279|gb|DR355036.1|DR355036
EST:     CATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAG                         GCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT
genomic: CATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAGgtatgtatgc ... attgctgtagGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtattgcttatacgtgcagctttttctctacttatgcattgtttattgctgtagGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACTTTTGAATGGAAAACCAATC
                                      attgtttatt  TA-rich tract