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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaattgtttgtcattccttgtggatttattaataatgttcaagcgaatcctaaaagttccttcaatatatgcgtcttctatacgaattgttttatatcgaaattttcagATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G63630.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63630.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g43120.1 (Oryza sativa), 3'ss of exon 4
gtgaaaattgtttgtcattccttgtggatttattaataatgttcaagcgaatcctaaaagttccttcaatatatgcgtcttctatacgaattgttttatatcgaaattttcagATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAG
                          | | ||   || |  | ||  |   || ||    |   |||    |    ||  | ||||| ||    | |  |  ||      |||||| | || ||||||||||||||||| ||||||||| | |||||||| || || ||| | ||  |  |||| |||||||| || ||||| ||||||||||
--------------------------gttgtacccatgaactacagacaggtcatatct-tggattcttagtgcaagttatgtatactaac-actgtgcactgat-caaacagATTCTTGTTGCTACACCTGGAAGGCTTAAAGACCATGTTGAGAACACACCTGGTTTTTCTACCCGACTAAAAGGTGTGAAGGTTCTTGTTCTTGATGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttccttcaatatatgcgtcttctatacgaattgttttatatcgaaattttcagATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAG
                                                ttttc  CT-rich tract
                              aattgttttatatcga  TA-rich tract