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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcactgatcctctctgtctacatatttgacttggtttctcttctacatactctcaggtttacataaattttctgatttcagGCTCAAGCGGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTAATCTCGTATGATGATGAGGTTTCCATGATGAGGAACGTTCTCAATGCCC

Basic information

species Arabidopsis thaliana
transcript AT5G62570.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125159786|gb|EL187700.1|EL187700
EST:     AGATTGAAAAG                         GCTCAAGCGGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTA
genomic: AGATTGAAAAGgcactgatcc ... ctgatttcagGCTCAAGCGGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacttggtttctcttctacatactctcaggtttacataaattttctgatttcagGCTCAAGCGGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTAATCTCGTATGATGATGAGGTTTCCATGATGAGGAACGTTCTCAATGCCC
                                           ttctgat  putative branch site (score: 3)
                                         ttttct  CT-rich tract
                               tttacataaattttct  TA-rich tract