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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggatcttttgtttggtccatttagatttaatctctttgttttcattttcattgctaattttttattatatattttcagGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G62410.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G62410.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 6
gtatgtggatcttttgtttggtccatttagatttaatctctttgttt-tcattttcattgctaatttt-ttattatatattttcagGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAAG
||  ||  ||    |  ||  ||    || ||| |   | |  || | | |       | | ||| || ||||| |  || |||||||||| ||||| |||||||||||||| ||||| || || || |||  ||| ||| | |||
gttagtcaatgcacttatttttctccataaattaatggtttcagtctgtgagccatggttcaaatattattattttgcatcttcagGTTGGTAAGGAGAATGCAGAACTGGCTCTTTCTTTGGTTGGATATGATGAGGAACTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttaatctctttgttttcattttcattgctaattttttattatatattttcagGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAAG
                            tgctaat  putative branch site (score: 2)
                                              tattttc  putative PPT
           tttgttttcattttca  TA-rich tract