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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccaacctttctgagatagattttggatctaatagttgtgtaggtatcattctctgaacaaactgtgtttttggcagAATAAAATCTACATATGGCTCGTGGGAACGTTCTTTTTCTGGTTTGTATTGGCTCTCTACTTTGACAACATCATCCCCAATGCATCCGGTGTGAGAAAAT

Basic information

species Arabidopsis thaliana
transcript AT5G61730.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61730.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 6
------------------------------------------------------------------------------------------------gtatgccaacctt---tctgagatagattttggatctaatagttgtgtaggtatcattctctgaacaaactgtgttt---ttggcagAATAAAATCTACATATGGCTCGTGGGAACGTTCTTTTTCTGGTTTGTATTGGCTCTCTACTTTGACAACATCATCCCCAATGCATCCGGTGTGAGAAAAT
                                                                                                 |||     | ||   ||     |    ||  |   || | ||  |   |  |   | ||| | |     | | |||   ||| ||| || | || || | |||||| | ||  || |||||| ||||||||||  ||||  | ||||||||||| || ||||| |||||||| |||||||| ||||
gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAAT

upper sequence: AT5G61730.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------------------------gta-tgccaacctttctgagatagat--tttggatctaa---tagttgtgtaggtatcatt-ctctgaacaaactgtgttt---ttggcagAATAAAATCTACATATGGCTCGTGGGAACGTTCTTTTTCTGGTTTGTATTGGCTCTCTACTTTGACAACATCATCCCCAATGCATCCGGTGTGAGAAAAT
                                                                                             || | | ||  || ||  |||   |   ||   |  |    |||||||||   |    || ||| |       | | |||   ||| ||| || | || || | |||||| |  |  || |||||| ||||||||||  ||||  | ||||||||||| || ||||| |||||||| |||||||| ||||
gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggatctaatagttgtgtaggtatcattctctgaacaaactgtgtttttggcagAATAAAATCTACATATGGCTCGTGGGAACGTTCTTTTTCTGGTTTGTATTGGCTCTCTACTTTGACAACATCATCCCCAATGCATCCGGTGTGAGAAAAT
    atctaat  putative branch site (score: 3)
                                           tgttttt  putative PPT
       taatagtt  TA-rich tract