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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttcatatcacatattactgaatgctgaatgtagcattagtaattctactgatacttgcttcatattttgtgaagGAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCT

Basic information

species Arabidopsis thaliana
transcript AT5G61580.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61580.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA10G33820.1 (Glycine max), 3'ss of exon 7
-------gttattt-catatcacatattactgaatgctga---------atgtagcattagtaattc--tactgatacttgcttcatattttgtgaagGAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCT
       |||| || || |  |   |||| ||  | | ||         ||||||  ||  | ||    || ||  |  |  |     |||| ||||||||||| | | |||||||||||||||||| ||  |||| ||||| ||||||||||||||||||||||||
gtaattggttacttgcacaaaattaattattgtcttcagatagtcaatcatgtagttttctttatggaataatgtaatataatcatctttttatgaagGAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCT

upper sequence: AT5G61580.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv16s0013g01140.t01 (Vitis vinifera), 3'ss of exon 7
---gttatttcatatcacatattactgaatgctgaatg--tagcattagtaattctactg--atacttgcttcatatttt-gtgaagGAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCT
    ||   || | |  ||| |  |||  |    |     ||   |||  ||| |  ||   ||| |     ||| |||| ||  ||||||| ||||  ||||||||||||||||| ||| | || || ||||||||||| || ||||| ||||||
gtgtttgagtcctctggcatgtatctgtttttccatccattactcttataaatccagctatcatattccagccatgtttttgtctagGAAGTAGAGAAACGTGGTCTTCAAGTGGCAGTTGCAGGAATCCCTAAGACAATCGACAATGACATTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctgaatgtagcattagtaattctactgatacttgcttcatattttgtgaagGAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCT
                          tactgat  putative branch site (score: 2)
               attagtaatt  TA-rich tract