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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttacttcgtcattccttctgccttagttagcgatcaatttgtagttgctccagcctcctagatacactgattcattttagagcacccatacgattctctatactaaatgacaaaacttctcattaggaaaccaaatgtctcctgcattccaactctgctatatctcaaagtgttgtcttatttggatgttggtgtagGGTATCCTTCAATCACAAGGAAGAATTTTGAAGAAAATGAGATTTACCCCATCATCGCTGACGTCAAATTCCCATAGGCTCTTGACTGCCATTGTTGAAT

Basic information

species Arabidopsis thaliana
transcript AT5G61150.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61150.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA06G21900.2 (Glycine max), 3'ss of exon 6
gtgttacttcgtcattccttctgccttagttagcgatcaatttgtagttgctccagcctcctagatacactgattcattttagagcacccatacgattctctatactaaatgacaaaacttctcattaggaaaccaaatgtctcctgcattccaactctgctatatctcaaagtgttgtcttatttggatgttggtgtagGGTATCCTTCAATCACAAGGAAGAATTTTGAAGAAAATGAGATTTACCCCATCATCGCTGACGTCAAATTCCCATAGGCTCTTGACTGCCATTGTTGAAT
                                                                                                                   ||  |  | |||       ||    | || || ||        | || |  | |  | || | | |  |||  ||| |  |  |||||||||| ||||||||||||||  | || | ||||||||| ||||  ||||| ||  || | |||||||| ||| |||| ||||||||| ||||||| |
----------------------------------------------------------------------------------------------------------------gtgaatttctttattc-----tcatggatttcttg-at----gaattactgttcccctcaatggtctat-gtttacatgct--tacagGGTATCCTCCAATCACAAGGAAGGTTGTTAAGGAAAATGAGGTTTATGCCATCTTCCTTGTCATCAAATTCTCATCGGCTGTTGACTGCCCTTGTTGACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415234|gb|EG457826.1|EG457826
EST:     AACAAGATGCAAAAGAAGACCAGAATCACCTCTTTATCAAACATGAAAAG                         GGTATCCTTCAATCACAAG
genomic: AACAAGATGCAAAAGAAGACCAGAATCACCTCTTTATCAAACATGAAAAGgtgttacttc ... gttggtgtagGGTATCCTTCAATCACAAG
EST: gi|116415235|gb|EG457827.1|EG457827
EST:     AACAAGATGCAAAAGAAGACCAGAATCACCTCTTTATCAAACATGAAAAG                         GGTATCCTTCAATCACAAG
genomic: AACAAGATGCAAAAGAAGACCAGAATCACCTCTTTATCAAACATGAAAAGgtgttacttc ... gttggtgtagGGTATCCTTCAATCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcattccaactctgctatatctcaaagtgttgtcttatttggatgttggtgtagGGTATCCTTCAATCACAAGGAAGAATTTTGAAGAAAATGAGATTTACCCCATCATCGCTGACGTCAAATTCCCATAGGCTCTTGACTGCCATTGTTGAAT
                                 tcttattt  TA-rich tract