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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctacaactattttctctgatgtgatttgtatgtggaaggttgtttgatgattctgtatcttctctgttaacagCTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGATCCTCCCGAGCCAGATACAGATTTTAGCGATGACGATAACAAGCGAGACC

Basic information

species Arabidopsis thaliana
transcript AT5G60760.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478264|gb|EG520856.1|EG520856
EST:     ACTTTTCTTGCTGCAGCTCGCCTAGGATGTTTGAAGGAACTTTTAAAGAG                         CTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGAT
genomic: ACTCTTCTTGCTGCAGCTCGCCTAGGATGTCTGAAGGAACTTCTAAAGAGgtactctaca ... ctgttaacagCTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGAT
EST: gi|116478263|gb|EG520855.1|EG520855
EST:     ACTTTTCTTGCTGCAGCTCGCCTAGGATGTTTGAAGGAACTTTTAAAGAG                         CTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGAT
genomic: ACTCTTCTTGCTGCAGCTCGCCTAGGATGTCTGAAGGAACTTCTAAAGAGgtactctaca ... ctgttaacagCTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgatttgtatgtggaaggttgtttgatgattctgtatcttctctgttaacagCTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGATCCTCCCGAGCCAGATACAGATTTTAGCGATGACGATAACAAGCGAGACC
                                ttctgtatcttctct  CT-rich tract
     atttgtat  TA-rich tract