Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttaatcttaatcattttgcttgacttgcagttttgacagaatttctttttcgtttcagACTGTCAAATATTTTAACAATGAAGGTTATGAGGCTGAAAAGTATGACCAGTTCCTGAAAA

Basic information

species Arabidopsis thaliana
transcript AT5G58270.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58270.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G40490.1 (Glycine max), 3'ss of exon 7
---------------------gtaaatttttaatcttaatcattttgcttgacttgcagttttgacagaatttctttttcg---tttcagACTGTCAAATATTTTAACAATGAAGGTTATGAGGCTGAAAAGTATGACCAGTTCCTGAAAA
                     |  | ||||| |     ||| |  |  | |  ||   |||   || |  ||| ||||      || |||||||| ||||||||||| ||||||| |||||| ||||| || |||||| ||| ||| || |
gtgagcattttagtcattaatgccagttttttaatgctatcttccttttcgtgtttttgttaccactgttttttttttcttgatttgcagACTGTGAAATATTTTAATAATGAAGTTTATGAAGCTGATAACTATGACAAGTACCTAAAGA

upper sequence: AT5G58270.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA14G38800.1 (Glycine max), 3'ss of exon 7
---------------------gtaaatttttaatcttaatcattttgcttgacttgcagttttgacagaatttctttttcgttt--cagACTGTCAAATATTTTAACAATGAAGGTTATGAGGCTGAAAAGTATGACCAGTTCCTGAAAA
                     |  | ||||| |   | ||| |  |  |||   ||   || |  ||   ||| ||| | ||||  |||||||| ||||||||||| ||||||| |||||| ||||| || |||||| ||| ||| || |
gtgagcattttggtcattaatgccagttttttaatgttatcctcctttttg---tgtttttgtaccactttttttttcttgttttgcagACTGTGAAATATTTTAATAATGAAGTTTATGAAGCTGATAACTATGACAAGTACCTAAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttaatcattttgcttgacttgcagttttgacagaatttctttttcgtttcagACTGTCAAATATTTTAACAATGAAGGTTATGAGGCTGAAAAGTATGACCAGTTCCTGAAAA
                           ttttgac  putative branch site (score: 3)
                                      tttctttttcgtttc  putative PPT
                                    aatttcttttt  TA-rich tract