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gtttgaaaaattatttcacacatatgcttttccaaaagtggtgcaatctgttacttgaaatgggatgatgatacgaggtttgcctacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATGGTAGTGCTGAAAAGGAGGAATCAG
species | Arabidopsis thaliana |
transcript | AT5G56360.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATCCAGCAGACGAG CATGTTGTGGAGAG-AAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCEST: gi|125183892|gb|EL198846.1|EL198846
genomic: AATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
EST: ACACTAATCCAGCAGACGAG CATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCEST: gi|125293329|gb|EL307414.1|EL307414
genomic: ACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
EST: AACCAACAAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAG CATGTTGTGGAGAGAAAAGAGGAAEST: gi|164166896|gb|ES042452.1|ES042452
genomic: AACCAACAAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAA
EST: TCACACTAATCCAGCAGACGAG CATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCEST: gi|164236004|gb|ES056163.1|ES056163
genomic: TCACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
EST: TCACACTAATCCAGCAGACGAG CATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
genomic: TCACACTAATCCAGCAGACGAGgtttgaaaaa ... tacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCC
ggtgcaatctgttacttgaaatgggatgatgatacgaggtttgcctacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATGGTAGTGCTGAAAAGGAGGAATCAG
tttgcct CT-rich tract
ttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaaaaattatttcacacatatgcttttccaaaagtggtgcaatctgttacttgaaatgggatgatgatacgaggtttgcctacaatgcagCATGTTGTGGAGAGAAAAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATGGTAGTGCTGAAAAGGAGGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA