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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgttcatgttgctctttgtcaaatttatcattcccaattactttcatgtattgagatcaatttcatttgttatctgaagGATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAA

Basic information

species Arabidopsis thaliana
transcript AT5G53430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 7
----------------------------gtacatgttcatgttgctctttgtcaa-atttatcattcccaa----ttactttcatgtattga-gatcaatttcatttgttatctgaagGATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAA
                              | || || || ||||   |||||   ||||     ||  ||    | | ||| || | |||  |||   | |  | | || |  | || || | |  |  || ||||| || || || || |||| | | || |||||||||||| |||| ||||||||||||||| |  |||||   ||
gtatatccattacttgatcttaattacttgatatcttaatattgccacttgtcggcatttgaagctcataaagtgtcattttgattttttgctgattggtgtattctttttttcgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAA

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 7
--------------gtacatgttcatgttgctctttgtcaaatttatcat----tcccaattactttcatgtattga-gatcaatttcatttgttatctgaagGATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAA
                | || || || |||    ||||     ||  |||    |  |  ||  |||  | | |||  |||   | |  | |||| | || || || | |  |  || ||||| || || || || |||| | | || |||||||||||| |||| ||||||||||||||| |  |||||  |||
gtatatccattacttgatatcttaatattgtcacttgttggcatttgcataaagtgactttttttttttttttttgctgattggtgtattctgttttttgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcattcccaattactttcatgtattgagatcaatttcatttgttatctgaagGATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAA
                                  aatttcatttgttat  TA-rich tract