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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagactttctttgttactttgcatttgagaatatacaattgagaagtctttgcatttgattttctcccgtctactaaagttagcattttgacctgaaacatttctgaaatgtttgcctccagGGAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAA

Basic information

species Arabidopsis thaliana
transcript AT5G53170.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164091126|gb|ES182709.1|ES182709
EST:     AAAGTTTACCCGCCTTGGAGGAAAGTTGCCAAAG                         GGAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAA
genomic: AAAGTTTACCCGCCTTGGAGGAAAGTTGCCAAAGgtatagactt ... ttgcctccagGGAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctactaaagttagcattttgacctgaaacatttctgaaatgtttgcctccagGGAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAA
                                            tttgcctcc  CT-rich tract
       taaagtta  TA-rich tract