1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtttcttgtcttttcagttttcacttttacatcaatcttaattgaaaccacgtcggtccaatggaacaaatggttaaactaatcatttttttcctttgtttgcccccaccaaacagGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCAT
species | Arabidopsis thaliana |
transcript | AT5G52660.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACA GTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTEST: gi|125307934|gb|EL322019.1|EL322019
genomic: GTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAgtacgtttct ... caccaaacagGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTT
EST: GTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACA GTGTTACTATTGATGAGAAATCTATCCATCAAEST: gi|86080283|gb|DR376040.1|DR376040
genomic: GTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAgtacgtttct ... caccaaacagGTGTTACTATTGATGAGAAATCTATCCATCAA
EST: GTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACA GTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTT
genomic: GTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAgtacgtttct ... caccaaacagGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTT
tggaacaaatggttaaactaatcatttttttcctttgtttgcccccaccaaacagGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCAT
aactaat putative branch site (score: 2)
tcatttttttcctttg CT-rich tract
ttaaactaatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttcttgtcttttcagttttcacttttacatcaatcttaattgaaaccacgtcggtccaatggaacaaatggttaaactaatcatttttttcctttgtttgcccccaccaaacagGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT