1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacctatgacgctatagttggaatgcctcattatgttactcgcatttgcatttcgaatagacatgccttttcttatatggttcttttttgtcatacacagATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTTTGGAGAACAAGCCCCTGTGATTTGAATGAAATTAGAAGAAGCTGTGGTGCTTTGCGAA
species | Arabidopsis thaliana |
transcript | AT5G51220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAATGGCAAGATATGTCCGGARAGAACTTGGTTCTCTTTCTTTAACAG ATAAAGAGTCCATATTYTCCGGCAATTTYTCCTTCACCCCTTTGGAGAACAEST: gi|164054573|gb|ES203686.1|ES203686
genomic: GCAATGGCAAGATATGTCCGGAGAGAACTTGGTTCTCTTTCTTTAACAGgtacctatga ... tcatacacagATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTTTGGAGAACA
EST: GCAATGGCTAAGATATGTCCGGAGAGAACTTGGTTCTCTTTCTTTAACAG ATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTT
genomic: GCAATGGC-AAGATATGTCCGGAGAGAACTTGGTTCTCTTTCTTTAACAGgtacctatga ... tcatacacagATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTT
ttgcatttcgaatagacatgccttttcttatatggttcttttttgtcatacacagATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTTTGGAGAACAAGCCCCTGTGATTTGAATGAAATTAGAAGAAGCTGTGGTGCTTTGCGAA
ttcttttttgtcat CT-rich tract
ttttcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctatgacgctatagttggaatgcctcattatgttactcgcatttgcatttcgaatagacatgccttttcttatatggttcttttttgtcatacacagATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTTTGGAGAACAAGCCCCTGTGATTTGAATGAAATTAGAAGAAGCTGTGGTGCTTTGCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG