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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcctacatcatctcagagagtatggtgccttagttctttggcctaaagtcttagtagctattatgtgctagaaatccacatgtccttttttcttttgttgttgttgttgttatattggcttgcattatgaaatatactgacaccacactgaatctatatctcctctttcttcagCAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAA

Basic information

species Arabidopsis thaliana
transcript AT5G50330.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 7
gtaagctcctacatcatctcagagagtatggtgccttagttctttggcctaaagtcttagtagctattatgtgctagaaatccacatgtccttttttcttttgttgttgttgttgttatattggcttgcattatgaaatatactgacaccacactgaatctatatctcctctttcttcagCAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAA
                                                                |  | | |  ||    |  ||| ||    |  ||  |  ||| | ||   |||    |   || ||  |    | || |  ||||  ||   | ||| ||           | ||| || || ||| | |||||  |    || ||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||  |||| ||||||
----------------------------------------------------------------tgctctattatatttcttgacaagt----tactcaataattggtctttccgttgccctttttttcaaaacagtaaatccatacacttca---attctgtaat---------tgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcattatgaaatatactgacaccacactgaatctatatctcctctttcttcagCAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAA
               tactgac  putative branch site (score: 1)
                                 tctatatctcctcttt  putative PPT
     ttatgaaatatact  TA-rich tract