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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaccctttttcaacattagttttcattgtttcttgggtgttttgttggtttaatctgtcaagcggaattaaatttgaactaaaggtggctacattgctagtttgctacttgttgcttaagggtcgaaatagattctgtttgatctctttttgagctctaaaattttcatttgtttttattattttctatgtgaagATGGGAACTGGGTTTAGCATCCTGATATCAAAAAGAAATCCTTCGTTGGTCACAACATTTGGTCTTCTATCATGTGGCTATCTCATGAGCTCGTACCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G49820.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038682|gb|DR334437.1|DR334437
EST:     TAGGAGACGTAACTGCTAAAGGAGAGTGTGTTGGTAATATTGCAGATCTG                         ATGGGAACTGGGTTTAGCATCCTGATATCAAAAAGAAATCCTTCGTTGGTC
genomic: TAGGAGACGTAACTGCTAAAGGAGAGTGTGTTGGTAATATTGCAGATCTGgtatgaccct ... ctatgtgaagATGGGAACTGGGTTTAGCATCCTGATATCAAAAAGAAATCCTTCGTTGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctctttttgagctctaaaattttcatttgtttttattattttctatgtgaagATGGGAACTGGGTTTAGCATCCTGATATCAAAAAGAAATCCTTCGTTGGTCACAACATTTGGTCTTCTATCATGTGGCTATCTCATGAGCTCGTACCAAG
              ctctaaa  putative branch site (score: 3)
                                tttttattattttct  putative PPT
                 taaaattttcatttgt  TA-rich tract