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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaagtagtcttcgatcagcattttttcttataggctcatctgtgcattctctcttgagaatgaattagacaattgattctataatggctagaaaatgttctcggatgacaataagtctttaggtaagttatgcaatttctaaaatattgttctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATTATCGAAGTTTTTGTTGCTAATCGTCATCGGGACAACCTGATGACTGCTG

Basic information

species Arabidopsis thaliana
transcript AT5G49390.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464480|gb|EG507072.1|EG507072
EST:     TGCAGCTGTTCGATTTGTCCGCCCTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464443|gb|EG507035.1|EG507035
EST:     TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464454|gb|EG507046.1|EG507046
EST:     TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464465|gb|EG507057.1|EG507057
EST:     CCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: CCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464476|gb|EG507068.1|EG507068
EST:     TCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464489|gb|EG507081.1|EG507081
EST:     TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464469|gb|EG507061.1|EG507061
EST:     TGCAGCTGTTCGATTTGTCCGCATTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464493|gb|EG507085.1|EG507085
EST:     TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: TGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
EST: gi|116464420|gb|EG507012.1|EG507012
EST:     CCCTAGTGGCTGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCAT                         AATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT
genomic: CCCTAGTGGCTGCAGCTGTTCGATTTGTCCGCACTCTCCTCTCTGTCCATgtaagtaaag ... tctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacaataagtctttaggtaagttatgcaatttctaaaatattgttctatttcagAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTGAAACCGATTATCGAAGTTTTTGTTGCTAATCGTCATCGGGACAACCTGATGACTGCTG
                               ttctaaa  putative branch site (score: 2)
                                            ttctatttc  putative PPT
                            aatttctaaaatattg  TA-rich tract